3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAGCAACGC
Length
10 nucleotides
Bulged bases
4YZV|1|QA|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YZV_021 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.0932
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97521.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4YZV|1|QA|G|963
4YZV|1|QA|A|964
4YZV|1|QA|A|965
4YZV|1|QA|G|966
4YZV|1|QA|C|967
4YZV|1|QA|A|968
4YZV|1|QA|A|969
4YZV|1|QA|C|970
4YZV|1|QA|G|971
4YZV|1|QA|C|972

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QI
30S ribosomal protein S9
Chain QJ
30S ribosomal protein S10
Chain QM
30S ribosomal protein S13
Chain QN
30S ribosomal protein S14 type Z
Chain QV
Transfer RNA; tRNA
Chain QY
Killer protein

Coloring options:


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