HL_4YZV_051

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_051 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.3028

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YZV|1|RA|C|544
4YZV|1|RA|G|545
4YZV|1|RA|C|546
4YZV|1|RA|A|547
4YZV|1|RA|A|548
4YZV|1|RA|G|549

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RV

50S ribosomal protein L21