HL_4YZV_086
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 4YZV|1|RA|A|2030, 4YZV|1|RA|A|2031, 4YZV|1|RA|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YZV_086 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.0719
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4YZV|1|RA|G|2027
4YZV|1|RA|U|2028
4YZV|1|RA|G|2029
4YZV|1|RA|A|2030
4YZV|1|RA|A|2031
4YZV|1|RA|G|2032
4YZV|1|RA|A|2033
4YZV|1|RA|U|2034
4YZV|1|RA|G|2035
4YZV|1|RA|C|2036
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RE
- 50S ribosomal protein L3
- Chain RV
- 50S ribosomal protein L21
Coloring options: