HL_4YZV_088

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4YZV|1|RA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_088 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.459

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4YZV|1|RA|C|2209
4YZV|1|RA|G|2210
4YZV|1|RA|G|2211
4YZV|1|RA|A|2212
4YZV|1|RA|U|2213
4YZV|1|RA|G|2215

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2