HL_4YZV_113

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4YZV|1|XA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_113 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0608

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4YZV|1|XA|G|259
4YZV|1|XA|G|260
4YZV|1|XA|U|261
4YZV|1|XA|A|262
4YZV|1|XA|A|263
4YZV|1|XA|U|264
4YZV|1|XA|G|265
4YZV|1|XA|G|266
4YZV|1|XA|C|267

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20