HL_4YZV_133

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4YZV|1|XA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_133 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3246

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4YZV|1|XA|G|1134
4YZV|1|XA|U|1135
4YZV|1|XA|U|1136
4YZV|1|XA|C|1137
4YZV|1|XA|G|1138
4YZV|1|XA|G|1139
4YZV|1|XA|C|1140

Current chains

Chain XA

16S rRNA

Nearby chains