HL_4YZV_171

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

4YZV|1|YA|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_171 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3503

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4YZV|1|YA|C|1092
4YZV|1|YA|G|1093
4YZV|1|YA|U|1094
4YZV|1|YA|A|1095
4YZV|1|YA|A|1096
4YZV|1|YA|U|1097
4YZV|1|YA|A|1098
4YZV|1|YA|G|1099

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6