3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGUCGUC
Length
7 nucleotides
Bulged bases
4YZV|1|YA|G|1325, 4YZV|1|YA|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YZV_175 not in the Motif Atlas
Homologous match to HL_7A0S_033
Geometric discrepancy: 0.0595
The information below is about HL_7A0S_033
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_49081.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
17

Unit IDs

4YZV|1|YA|G|1324
4YZV|1|YA|G|1325
4YZV|1|YA|U|1326
4YZV|1|YA|C|1327
4YZV|1|YA|G|1328
4YZV|1|YA|U|1329
4YZV|1|YA|C|1330

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YR
50S ribosomal protein L17
Chain YW
50S ribosomal protein L22

Coloring options:


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