3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
4YZV|1|YA|A|1913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YZV_190 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.1082
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4YZV|1|YA|G|1910
4YZV|1|YA|U|1911
4YZV|1|YA|A|1912
4YZV|1|YA|A|1913
4YZV|1|YA|C|1914
4YZV|1|YA|U|1915
4YZV|1|YA|A|1916
4YZV|1|YA|U|1917
4YZV|1|YA|A|1918
4YZV|1|YA|A|1919
4YZV|1|YA|C|1920

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XV
Transfer RNA; tRNA
Chain XY
Killer protein

Coloring options:


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