HL_4Z8C_010

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4Z8C|1|1A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_010 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0387

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4Z8C|1|1A|U|328
4Z8C|1|1A|U|329
4Z8C|1|1A|G|330
4Z8C|1|1A|G|331
4Z8C|1|1A|G|332
4Z8C|1|1A|A|333
4Z8C|1|1A|A|334
4Z8C|1|1A|G|335

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1Y

50S ribosomal protein L24