HL_4Z8C_052

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4Z8C|1|1A|A|2279, 4Z8C|1|1A|C|2286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0395

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4Z8C|1|1A|C|2275
4Z8C|1|1A|U|2276
4Z8C|1|1A|A|2277
4Z8C|1|1A|A|2278
4Z8C|1|1A|A|2279
4Z8C|1|1A|A|2280
4Z8C|1|1A|G|2281
4Z8C|1|1A|G|2282
4Z8C|1|1A|U|2283
4Z8C|1|1A|A|2284
4Z8C|1|1A|A|2285
4Z8C|1|1A|C|2286
4Z8C|1|1A|G|2287

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16