HL_4Z8C_151

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4Z8C|1|2A|A|1934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_151 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1506

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4Z8C|1|2A|G|1931
4Z8C|1|2A|U|1932
4Z8C|1|2A|A|1933
4Z8C|1|2A|A|1934
4Z8C|1|2A|C|1935
4Z8C|1|2A|U|1936
4Z8C|1|2A|A|1937
4Z8C|1|2A|U|1938
4Z8C|1|2A|A|1939
4Z8C|1|2A|A|1940
4Z8C|1|2A|C|1941

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA