HL_4ZDO_004
3D structure
- PDB id
- 4ZDO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GUUCAAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33239.16
- Basepair signature
- cWW-R-R-tWH-R-R-R
- Number of instances in this motif group
- 96
Unit IDs
4ZDO|1|E|G|53||A
4ZDO|1|E|U|54||A
4ZDO|1|E|U|55||A
4ZDO|1|E|C|56||A
4ZDO|1|E|A|57||A
4ZDO|1|E|A|58||A
4ZDO|1|E|U|59||A
4ZDO|1|E|U|60||A
4ZDO|1|E|C|61||A
Current chains
- Chain E
- selenocysteine tRNA
Nearby chains
- Chain C
- O-phosphoseryl-tRNA(Sec) selenium transferase
Coloring options: