HL_33239.16

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_4V9K_035	4V9K	0.3794	0	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
2	HL_4QEI_003	4QEI	0.4102	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
3	HL_5E6M_003	5E6M	0.4134	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
4	HL_2ZNI_003	2ZNI	0.4413	0	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
5	HL_4V90_034	4V90	0.3623	0	T-loop with 2 stacked bulged bases	AV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
6	HL_6NWY_035	6NWY	0.3469	0		QV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
7	HL_4GXY_002	4GXY	0.3920	0	T-loop with 2 stacked bulged bases	A	Adenosylcobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH
8	HL_6JQ6_003	6JQ6	0.2973	0	T-loop with 2 stacked bulged bases	U	RNA (81-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
9	HL_6JQ5_001	6JQ5	0.3122	0	T-loop with 2 stacked bulged bases	A	RNA (82-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
10	HL_6JQ5_003	6JQ5	0.3033	0	T-loop with 2 stacked bulged bases	B	RNA (82-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
11	HL_3IGI_001	3IGI	0.2705	0	T-loop with 2 stacked bulged bases	A	Group IIC intron	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
12	HL_1N78_003	1N78	0.1710	0	T-loop with 2 stacked bulged bases	C	tRNA(Glu)	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
13	HL_3EPH_003	3EPH	0.1974	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
14	HL_3TUP_003	3TUP	0.2182	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
15	HL_3AM1_004	3AM1	0.2550	0	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
16	HL_3FOZ_006	3FOZ	0.2331	0	T-loop with 2 stacked bulged bases	D	tRNA(Phe)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
17	HL_3RG5_008	3RG5	0.1528	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
18	HL_3W3S_004	3W3S	0.1781	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
19	HL_3ADD_004	3ADD	0.2117	0	T-loop with 2 stacked bulged bases	C	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
20	HL_5WWT_002	5WWT	0.2089	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
21	HL_4X4V_001	4X4V	0.1750	0	T-loop with 2 stacked bulged bases	B	Human MenBeta minihelix ending in CCACC	G	12	U	13	U	14	C	15	G	16	A	17	G	18	U	19	C	20	cWW	tWH
22	HL_2DU3_003	2DU3	0.1660	0	T-loop with 2 stacked bulged bases	D	tRNA	G	952	U	953	U	954	C	955	G	956	A	957	A	958	U	959	C	960	cWW	tWH
23	HL_4LCK_003	4LCK	0.1439	0	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
24	HL_4MGN_004	4MGN	0.1811	0	T-loop with 2 stacked bulged bases	B	tRNA-glycine	G	52	U	53	U	54	C	55	G	56	A	57	G	58	U	59	C	60	cWW	tWH
25	HL_2DER_006	2DER	0.2227	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
26	HL_2D6F_006	2D6F	0.1806	0	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
27	HL_5UD5_003	5UD5	0.2108	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
28	HL_4P5J_003	4P5J	0.1407	0	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
29	HL_4ZDO_004	4ZDO	0.1435	0	T-loop with 2 stacked bulged bases	E	Selenocysteine transfer RNA	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
30	HL_1WZ2_008	1WZ2	0.1730	0	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
31	HL_4WJ4_003	4WJ4	0.1353	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
32	HL_2AZX_006	2AZX	0.1533	0	T-loop with 2 stacked bulged bases	D	72-MER	G	553	U	554	U	555	C	556	G	557	A	558	A	559	U	560	C	561	ncWW	tWH
33	HL_4TUE_035	4TUE	0.1423	0	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
34	HL_5WT1_003	5WT1	0.1304	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
35	HL_1QU2_003	1QU2	0.1021	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
36	HL_1J1U_003	1J1U	0.0828	0	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
37	HL_2ZUE_003	2ZUE	0.1058	0	T-loop with 2 stacked bulged bases	B	tRNA-Arg	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
38	HL_4RDX_003	4RDX	0.1145	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
39	HL_4YYE_003	4YYE	0.0835	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
40	HL_3ZGZ_003	3ZGZ	0.0773	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
41	HL_4YCO_003	4YCO	0.0000	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
42	HL_5AXM_003	5AXM	0.0770	0	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
43	HL_6PMO_005	6PMO	0.1117	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
44	HL_1QTQ_003	1QTQ	0.1155	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
45	HL_5HR6_003	5HR6	0.1003	0	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
46	HL_5HR7_006	5HR7	0.1149	0	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
47	HL_4JXZ_003	4JXZ	0.1113	0	T-loop with 2 stacked bulged bases	B	RNA (71-MER)	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
48	HL_3AL0_003	3AL0	0.1394	0	T-loop with 2 stacked bulged bases	E	tRNAGln	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
49	HL_6UFM_003	6UFM	0.1339	0	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
50	HL_6JXM_003	6JXM	0.1303	0	T-loop with 2 stacked bulged bases	B	tRNA	G	74	U	75	U	76	C	77	G	78	A	79	G	80	U	81	C	82	cWW	tWH
51	HL_2ZZN_006	2ZZN	0.1199	0	T-loop with 2 stacked bulged bases	D	RNA (71-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
52	HL_3WQY_003	3WQY	0.1212	0	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
53	HL_5X6B_003	5X6B	0.1127	0	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
54	HL_2ZZM_004	2ZZM	0.1199	0	T-loop with 2 stacked bulged bases	B	RNA (84-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
55	HL_2BTE_004	2BTE	0.1700	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
56	HL_5AH5_008	5AH5	0.1347	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
57	HL_4V9Q_215	4V9Q	0.1604	0	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
58	HL_4WT8_217	4WT8	0.1519	0	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
59	HL_5B63_004	5B63	0.1492	0	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
60	HL_4GCW_002	4GCW	0.1457	0	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
61	HL_1U0B_003	1U0B	0.1606	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
62	HL_3AMU_003	3AMU	0.1702	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
63	HL_3WFS_003	3WFS	0.1676	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
64	HL_3ICQ_005	3ICQ	0.2507	0	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
65	HL_4V8Q_110	4V8Q	0.2242	0	T-loop with 2 stacked bulged bases	BY	SsrA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
66	HL_6MJ0_009	6MJ0	0.1860	0	T-loop with 2 stacked bulged bases	B	tRNA-like 3' UTR element	G	66	U	67	G	68	C	69	A	70	A	71	C	72	U	73	C	74	cWW	tWH
67	HL_5Y85_003	5Y85	0.2815	0	T-loop with 2 stacked bulged bases	D	DNA/RNA (50-MER)	G	11	U	12	G	13	C	14	A	15	A	16	G	17	U	18	C	19	cWW	tWH
68	HL_4V8N_145	4V8N	0.2489	0	T-loop with 2 stacked bulged bases	CV	tRNA	G	55	U	56	U	57	C	58	G	59	A	60	A	61	U	62	C	63	cWW	tWH
69	HL_4WF9_018	4WF9	0.2951	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	609	U	610	U	611	U	612	G	613	U	614	A	615	G	616	A	618	cWW
70	HL_5J7L_150	5J7L	0.2813	1	T-loop with 2 stacked bulged bases	DA	LSU rRNA	U	566	U	567	U	568	U	569	G	570	U	571	A	572	U	573	A	575	cWW
71	HL_7A0S_018	7A0S	0.3385	1		X	LSU rRNA	U	575	A	576	U	577	U	578	G	579	A	580	A	581	G	582	A	584	cWW
72	HL_7RQB_018	7RQB	0.3393	1		1A	LSU rRNA	U	566	A	567	U	568	U	569	G	570	A	571	A	572	G	573	A	575	cWW
73	HL_5TBW_014	5TBW	0.3194	1	T-loop with 2 stacked bulged bases	1	LSU rRNA	U	640	C	641	U	642	U	643	G	644	A	645	A	646	A	647	A	649	cWW
74	HL_6CU1_001	6CU1	0.3759	0	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
75	HL_5J7L_165	5J7L	0.4239	0	T-loop with 2 stacked bulged bases	DA	LSU rRNA	G	1281	U	1282	G	1283	A	1284	A	1285	A	1286	A	1287	G	1288	C	1289	cWW	tWH
76	HL_5TBW_031	5TBW	0.4279	0	T-loop with 2 stacked bulged bases	1	LSU rRNA	A	1462	U	1463	G	1464	A	1465	G	1466	A	1467	A	1468	C	1469	U	1470	cWW	tWH
77	HL_4V9F_034	4V9F	0.4520	0	T-loop with 2 stacked bulged bases	0	LSU rRNA	G	1387	U	1388	G	1389	A	1390	G	1391	A	1392	A	1393	C	1394	C	1395	cWW	tWH
78	HL_4WF9_032	4WF9	0.4326	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1318	U	1319	G	1320	A	1321	G	1322	A	1323	A	1324	U	1325	C	1326	cWW	tWH
79	HL_7RQB_033	7RQB	0.3914	0		1A	LSU rRNA	G	1281	U	1282	G	1283	A	1284	G	1285	A	1286	A	1287	U	1288	C	1289	cWW	tWH
80	HL_7A0S_032	7A0S	0.4011	0		X	LSU rRNA	G	1294	U	1295	G	1296	A	1297	G	1298	A	1299	A	1300	U	1301	C	1302	cWW	tWH
81	HL_5T5A_001	5T5A	0.4300	0	T-loop with 2 stacked bulged bases	A	DNA/RNA (71-MER)	G	21	U	22	G	23	C	24	A	25	A	26	G	27	C	28	C	29	cWW	tWH
82	HL_3OVB_001	3OVB	0.4396	0	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH
83	HL_2DRA_001	2DRA	0.3794	0	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
84	HL_1GAX_006	1GAX	0.4009	0	T-loop with 2 stacked bulged bases	D	TRNA(VAL)	G	952	U	953	U	954	C	955	A	956	A	957	G	958	U	959	C	960	cWW	tWH
85	HL_2CSX_003	2CSX	0.3315	0	T-loop with 2 stacked bulged bases	C	RNA (75-MER)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
86	HL_1J2B_002	1J2B	0.4065	0	Other HL	C	tRNA(Val)	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
87	HL_6UFG_008	6UFG	0.4468	0	T-loop with 2 stacked bulged bases	B	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	G	60	U	61	C	62	cWW	tWH
88	HL_3VJR_001	3VJR	0.5816	0	Other HL	B	tRNA CCA-acceptor	G	13	U	14	U	15	C	16	G	17	A	18	U	19	C	20	C	21	cWW	tWH
89	HL_3F2X_004	3F2X	0.7625	0	T-loop with 2 bulged bases not stacked	X	FMN riboswitch	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
90	HL_3F2X_001	3F2X	0.7369	0	T-loop with 2 bulged bases not stacked	X	FMN riboswitch	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
91	HL_5C45_001	5C45	0.7534	0	T-loop with 2 bulged bases not stacked	X	FMN Riboswitch	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
92	HL_6DN2_001	6DN2	0.7665	0	T-loop with 2 bulged bases not stacked	X	RNA RIBOSWITCH	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
93	HL_5C45_003	5C45	0.7864	0	T-loop with 2 bulged bases not stacked	Y	FMN Riboswitch	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
94	HL_6DN2_003	6DN2	0.7696	0	T-loop with 2 bulged bases not stacked	Y	RNA (56-MER)	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
95	HL_4FRG_001	4FRG	0.7563	0	T-loop with 2 bulged bases not stacked	B	cobalamin riboswitch aptamer domain	G	28	U	29	G	30	A	31	A	32	A	33	U	34	U	35	C	36	cWW	tWH
96	HL_4FRN_005	4FRN	0.7791	0	T-loop with 2 bulged bases not stacked	B	Cobalamin riboswitch aptamer domain	G	28	U	29	G	30	U	31	A	32	A	33	U	34	U	35	C	36	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAAUC	15
GUUCAAAUC	12
GUUCGAUUC	11
GUUCAAGUC	9
GUUCGAGUC	7
GUGAAAUUC	7
GUGAGAAUC	6
GUUCGAUCC	4
GUUCAAUUC	3
GUUCGACUC	3
GUGCAAGUC	2
GUGCAACUC	2
UAUUGAAGCA	2
GUGAAACUC	1
GUGAGAGUC	1
GUUAGAUUC	1
GUUCGAGCC	1
UUUUGUAGAA	1
UUUUGUAUAA	1
UCUUGAAACA	1
GUUCGAGAC	1
GUGAAAAGC	1
AUGAGAACU	1
GUGAGAACC	1
GUGCAAGCC	1
GUGUAAUUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAAU	15
UUCAAAU	12
UUCGAUU	11
UUCAAGU	9
UUCGAGU	7
UGAAAUU	7
UGAGAAU	6
UUCGAUC	4
UUCAAUU	3
UUCGACU	3
UGCAAGU	2
UGCAACU	2
AUUGAAGC	2
UGAGAAC	2
UGAAACU	1
UGAGAGU	1
UUAGAUU	1
UUCGAGC	1
UUUGUAGA	1
UUUGUAUA	1
CUUGAAAC	1
UUCGAGA	1
UGAAAAG	1
UGCAAGC	1
UGUAAUU	1

Release history

Release	3.62
Date	2022-10-12
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_33239.16 Version HL_33239.16 of this group appears in releases 3.62 to 3.62 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_33239.16 Version HL_33239.16 of this group appears in releases 3.62 to 3.62

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Csv

Json