HL_4ZER_039

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4ZER|1|1A|A|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_039 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.0675

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

4ZER|1|1A|C|1677
4ZER|1|1A|A|1678
4ZER|1|1A|A|1679
4ZER|1|1A|G|1680
4ZER|1|1A|A|1681
4ZER|1|1A|G|1682

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains