HL_4ZER_055

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_055 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0657

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4ZER|1|1A|C|2367
4ZER|1|1A|C|2368
4ZER|1|1A|U|2369
4ZER|1|1A|G|2370
4ZER|1|1A|C|2371
4ZER|1|1A|A|2372
4ZER|1|1A|A|2373
4ZER|1|1A|G|2374

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15