HL_4ZER_059

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4ZER|1|1A|G|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_059 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.071

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4ZER|1|1A|U|2540
4ZER|1|1A|G|2541
4ZER|1|1A|A|2542
4ZER|1|1A|A|2543
4ZER|1|1A|G|2544
4ZER|1|1A|A|2545
4ZER|1|1A|A|2546
4ZER|1|1A|G|2547

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6