3D structure

PDB id
4ZER (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUGGGAAG
Length
8 nucleotides
Bulged bases
4ZER|1|2A|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4ZER_114 not in the Motif Atlas
Homologous match to HL_7RQB_010
Geometric discrepancy: 0.0858
The information below is about HL_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4ZER|1|2A|U|305
4ZER|1|2A|U|306
4ZER|1|2A|G|307
4ZER|1|2A|G|308
4ZER|1|2A|G|309
4ZER|1|2A|A|310
4ZER|1|2A|A|311
4ZER|1|2A|G|312

Current chains

Chain 2A
23s ribosomal RNA

Nearby chains

Chain 2Y
50S ribosomal protein L24

Coloring options:


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