3D structure

PDB id
4ZER (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAAG
Length
4 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4ZER_143 not in the Motif Atlas
Homologous match to HL_7RQB_039
Geometric discrepancy: 0.0767
The information below is about HL_7RQB_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38927.5
Basepair signature
cWW-F
Number of instances in this motif group
32

Unit IDs

4ZER|1|2A|C|1565
4ZER|1|2A|A|1566
4ZER|1|2A|A|1567
4ZER|1|2A|G|1568

Current chains

Chain 2A
23s ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2

Coloring options:


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