Motif HL_38927.5 Version HL_38927.5 of this group appears in releases 3.86 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8X5V_003 | 8X5V | 0.3348 | 3 | B | RNA (110-mer) | U | 91 | U | 94 | A | 96 | cWW | |
| 2 | HL_2OEU_001 | 2OEU | 0.2329 | 3 | A | Hammerhead Ribozyme | C | 15 | U | 19 | G | 20 | cWW | |
| 3 | HL_2F8K_001 | 2F8K | 0.2307 | 1 | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW | |
| 4 | HL_5TBW_040 | 5TBW | 0.1973 | 2 | 1 | LSU rRNA | C | 1792 | U | 1795 | G | 1796 | cWW | |
| 5 | HL_2QUS_002 | 2QUS | 0.2110 | 3 | A | Hammerhead ribozyme | C | 32 | U | 36 | G | 37 | cWW | |
| 6 | HL_2QUW_002 | 2QUW | 0.2173 | 3 | B | Hammerhead ribozyme, cleaved fragment | C | 32 | U | 36 | G | 37 | cWW | |
| 7 | HL_5DH6_001 | 5DH6 | 0.1845 | 3 | A | hammerhead ribozyme | C | 16 | U | 20 | G | 21 | cWW | |
| 8 | HL_7QR8_002 | 7QR8 | 0.1847 | 1 | A | PTPRC sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 9 | HL_4ZT0_005 | 4ZT0 | 0.2079 | 1 | D | single-guide RNA | C | 55 | A | 57 | G | 58 | cWW | |
| 10 | HL_7QQP_002 | 7QQP | 0.2106 | 1 | A | AAVS1 sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 11 | HL_7ZO1_002 | 7ZO1 | 0.2405 | 1 | A | CD34 sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 12 | HL_7Z4D_002 | 7Z4D | 0.2531 | 1 | A | sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 13 | HL_5J7L_172 | 5J7L | 0.3049 | 1 | DA | LSU rRNA | C | 1565 | G | 1567 | G | 1568 | cWW | |
| 14 | HL_7RQB_039 | 7RQB | 0.2569 | 1 | 1A | LSU rRNA | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 15 | HL_7A0S_039 | 7A0S | 0.3097 | 1 | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW | |
| 16 | HL_5F9R_002 | 5F9R | 0.2611 | 1 | A | RNA (116-MER) | C | 73 | A | 75 | G | 76 | cWW | |
| 17 | HL_6AEG_002 | 6AEG | 0.2489 | 1 | A | RNA (95-MER) | C | 55 | A | 57 | G | 58 | cWW | |
| 18 | HL_5B2T_002 | 5B2T | 0.2116 | 1 | A | Guide RNA | C | 55 | A | 57 | G | 58 | cWW | |
| 19 | HL_7QR0_002 | 7QR0 | 0.2076 | 1 | A | TRAC sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 20 | HL_7QQX_002 | 7QQX | 0.2123 | 1 | A | FANCF sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 21 | HL_5FQ5_002 | 5FQ5 | 0.2121 | 1 | A | SGRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 22 | HL_5VW1_002 | 5VW1 | 0.2050 | 1 | C | sgRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 23 | HL_8KAH_001 | 8KAH | 0.1409 | 1 | I | RNA (65-MER) | C | 55 | A | 57 | G | 58 | cWW | |
| 24 | HL_8DP3_002 | 8DP3 | 0.0000 | 2 | R | RNA (90-MER) | C | 39 | U | 41 | G | 43 | cWW | |
| 25 | HL_5AH5_007 | 5AH5 | 0.1655 | 2 | D | tRNA | C | 46|||A | C | 46|||C | G | 46|||E | cWW | |
| 26 | HL_8C3A_198 | 8C3A | 0.1600 | 1 | CM | SSU rRNA | C | 274 | U | 276 | G | 277 | cWW | |
| 27 | HL_6MSF_001 | 6MSF | 0.1469 | 2 | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW | |
| 28 | HL_6MSF_002 | 6MSF | 0.1689 | 2 | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW | |
| 29 | HL_5J7L_204 | 5J7L | 0.1447 | 2 | DB | 5S rRNA | G | 86 | C | 88 | C | 90 | cWW | |
| 30 | HL_6JOO_002 | 6JOO | 0.2025 | 1 | B | Guide RNA | C | 58 | C | 60 | G | 61 | cWW | |
| 31 | HL_4LFB_018 | 4LFB | 0.2618 | 2 | A | SSU rRNA | G | 838 | C | 840 | C | 848 | ncWW | |
| 32 | HL_4KR9_001 | 4KR9 | 0.3580 | 3 | M | RNA (39-MER) | G | 10 | U | 13 | C | 15 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG | 13 |
| CUGAUG | 4 |
| CAAG | 2 |
| GUCAC | 2 |
| GUCUC | 2 |
| UUUUUA | 1 |
| UUGA | 1 |
| CCGUG | 1 |
| CAGG | 1 |
| CAUUG | 1 |
| CUCUG | 1 |
| CUUG | 1 |
| CUCG | 1 |
| GUGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA | 13 |
| UGAU | 4 |
| UCU | 3 |
| AA | 2 |
| UCA | 2 |
| UUUU | 1 |
| UG | 1 |
| CGU | 1 |
| AG | 1 |
| AUU | 1 |
| UU | 1 |
| UC | 1 |
| UGUC | 1 |
Release history
| Release | 3.86 |
|---|---|
| Date | 2024-07-17 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: