HL_38927.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	1-3
1	HL_8X5V_003	8X5V	0.3348	3	Mini UNCG	B	RNA (110-mer)	U	91	U	94	A	96	cWW
2	HL_2OEU_001	2OEU	0.2329	3	Mini UNCG	A	Hammerhead Ribozyme	C	15	U	19	G	20	cWW
3	HL_2F8K_001	2F8K	0.2307	1	Mini UNCG	B	RNA (16-mer)	U	6	G	8	A	9	cWW
4	HL_5TBW_040	5TBW	0.1973	2	Mini UNCG	1	LSU rRNA	C	1792	U	1795	G	1796	cWW
5	HL_2QUS_002	2QUS	0.2110	3	Mini UNCG	A	Hammerhead ribozyme (type III)	C	32	U	36	G	37	cWW
6	HL_2QUW_002	2QUW	0.2173	3	Mini UNCG	B	Hammerhead ribozyme, cleaved fragment	C	32	U	36	G	37	cWW
7	HL_5DH6_001	5DH6	0.1845	3	Mini UNCG	A	Hammerhead ribozyme (type III)	C	16	U	20	G	21	cWW
8	HL_7QR8_002	7QR8	0.1847	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
9	HL_4ZT0_005	4ZT0	0.2079	1	Mini UNCG	D	tracrRNA	C	55	A	57	G	58	cWW
10	HL_7QQP_002	7QQP	0.2106	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
11	HL_7ZO1_002	7ZO1	0.2405	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
12	HL_7Z4D_002	7Z4D	0.2531	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
13	HL_5J7L_172	5J7L	0.3049	1	Mini UNCG	DA	LSU rRNA	C	1565	G	1567	G	1568	cWW
14	HL_7RQB_039	7RQB	0.2569	1	Mini UNCG (H)	1A	LSU rRNA	C	1565	A	1567	G	1568	cWW
15	HL_7A0S_039	7A0S	0.3097	1	Mini UNCG	X	LSU rRNA	C	1581	A	1583	G	1584	cWW
16	HL_5F9R_002	5F9R	0.2611	1	Mini UNCG	A	tracrRNA	C	73	A	75	G	76	cWW
17	HL_6AEG_002	6AEG	0.2489	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
18	HL_5B2T_002	5B2T	0.2116	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
19	HL_7QR0_002	7QR0	0.2076	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
20	HL_7QQX_002	7QQX	0.2123	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
21	HL_5FQ5_002	5FQ5	0.2121	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
22	HL_5VW1_002	5VW1	0.2050	1	Mini UNCG	C	tracrRNA	C	55	A	57	G	58	cWW
23	HL_8KAH_001	8KAH	0.1409	1	Mini UNCG	I	tracrRNA	C	55	A	57	G	58	cWW
24	HL_8DP3_002	8DP3	0.0000	2	Mini UNCG	R	Enterovirus 5' cloverleaf cis-acting replication element	C	39	U	41	G	43	cWW
25	HL_5AH5_007	5AH5	0.1655	2	Mini UNCG	D	tRNA	C	46\|\|\|A	C	46\|\|\|C	G	46\|\|\|E	cWW
26	HL_8C3A_198	8C3A	0.1600	1	Mini UNCG	CM	SSU rRNA	C	274	U	276	G	277	cWW
27	HL_6MSF_001	6MSF	0.1469	2	Mini UNCG	R	RNA (14-mer)	G	6\|\|\|\|P_1	C	8\|\|\|\|P_1	C	10\|\|\|\|P_1	cWW
28	HL_6MSF_002	6MSF	0.1689	2	Mini UNCG	S	RNA (10-mer)	G	6\|\|\|\|P_1	C	8\|\|\|\|P_1	C	10\|\|\|\|P_1	cWW
29	HL_5J7L_204	5J7L	0.1447	2	Mini UNCG	DB	5S rRNA	G	86	C	88	C	90	cWW
30	HL_6JOO_002	6JOO	0.2025	1	Mini UNCG	B	Guide RNA	C	58	C	60	G	61	cWW
31	HL_4LFB_018	4LFB	0.2618	2	Mini UNCG	A	SSU rRNA	G	838	C	840	C	848	ncWW
32	HL_4KR9_001	4KR9	0.3580	3	Mini UNCG	M	RNA (39-MER)	G	10	U	13	C	15	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAG	13
CUGAUG	4
CAAG	2
GUCAC	2
GUCUC	2
UUUUUA	1
UUGA	1
CCGUG	1
CAGG	1
CAUUG	1
CUCUG	1
CUUG	1
CUCG	1
GUGUCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UA	13
UGAU	4
UCU	3
AA	2
UCA	2
UUUU	1
UG	1
CGU	1
AG	1
AUU	1
UU	1
UC	1
UGUC	1

Release history

Release	3.86
Date	2024-07-17
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_38927.5 Version HL_38927.5 of this group appears in releases 3.86 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_38927.5 Version HL_38927.5 of this group appears in releases 3.86 to 3.86

Download

Csv

Json