HL_4ZER_189

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

4ZER|1|2a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_189 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0949

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

4ZER|1|2a|G|617
4ZER|1|2a|C|618
4ZER|1|2a|U|619
4ZER|1|2a|C|620
4ZER|1|2a|A|621
4ZER|1|2a|A|622
4ZER|1|2a|C|623

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2p

30S ribosomal protein S16