HL_4ZNP_004

3D structure

PDB id

4ZNP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of A pfI Riboswitch Bound to ZMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CGACCGCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZNP_004 not in the Motif Atlas

Geometric match to HL_4ZNP_002

Geometric discrepancy: 0.1702

The information below is about HL_4ZNP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67407.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4ZNP|1|B|C|58
4ZNP|1|B|G|59
4ZNP|1|B|A|60
4ZNP|1|B|C|61
4ZNP|1|B|C|62
4ZNP|1|B|G|63
4ZNP|1|B|C|64
4ZNP|1|B|C|65
4ZNP|1|B|U|66
4ZNP|1|B|G|67
4ZNP|1|B|G|68

Current chains

Chain B

pfI Riboswitch

Nearby chains