Motif HL_36265.1 Version HL_36265.1 of this group appears in releases 4.1 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5BTP_004 | 5BTP | 0.4030 | 1 | B | ZMP/ZTP riboswitch | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW | |
| 2 | HL_4ZNP_002 | 4ZNP | 0.2023 | 1 | A | ZMP/ZTP riboswitch | C | 58 | G | 59 | C | 61 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW | |
| 3 | HL_9BZC_003 | 9BZC | 0.0000 | 1 | A | RNA (87-MER) | C | 77 | G | 78 | C | 80 | C | 81 | G | 82 | U | 83 | C | 84 | U | 85 | G | 86 | G | 87 | cWW | |
| 4 | HL_4XWF_002 | 4XWF | 0.1542 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | |
| 5 | HL_8VVJ_002 | 8VVJ | 0.2197 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | |
| 6 | HL_4PJO_002 | 4PJO | 0.3384 | 1 | 2 | U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. | G | 17 | A | 18 | G | 20 | U | 21 | G | 22 | C | 23 | A | 24 | C | 25 | A | 26 | C | 27 | cWW | ntWW |
| 7 | HL_7JRT_002 | 7JRT | 0.4792 | 1 | A | RNA nano bracelet | G | 102 | A | 103 | G | 105 | C | 106 | C | 107 | U | 108 | C | 109 | C | 110 | A | 111 | C | 112 | cWW | ncBW |
| 8 | HL_7JRT_001 | 7JRT | 0.5712 | 1 | A | RNA nano bracelet | G | 35 | A | 36 | G | 38 | C | 39 | U | 40 | C | 41 | G | 42 | C | 43 | A | 44 | C | 45 | cWW | cwW |
| 9 | HL_7JRT_003 | 7JRT | 0.3926 | 1 | B | RNA nano bracelet | G | 35 | A | 36 | G | 38 | C | 39 | U | 40 | C | 41 | G | 42 | C | 43 | A | 44 | C | 45 | ncWW | cWw |
| 10 | HL_7JRS_002 | 7JRS | 0.4331 | 1 | B | RNA 3D nanocage | G | 63 | A | 64 | G | 66 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | cWW | ncwW |
| 11 | HL_6MJ0_011 | 6MJ0 | 0.6549 | 1 | A | tRNA-like 3' UTR element | C | 80 | U | 81 | U | 83 | C | 84 | U | 85 | C | 86 | C | 87 | G | 88 | A | 89 | G | 90 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACCGUCUGG | 2 |
| CGCCCGCCUGG | 2 |
| GAAGCUCGCAC | 2 |
| CGACCGCCUGG | 1 |
| GAGGUGCACAC | 1 |
| GAAGCCUCCAC | 1 |
| GAAGCAGGCAC | 1 |
| CUUUCUCCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACCGUCUG | 2 |
| GCCCGCCUG | 2 |
| AAGCUCGCA | 2 |
| GACCGCCUG | 1 |
| AGGUGCACA | 1 |
| AAGCCUCCA | 1 |
| AAGCAGGCA | 1 |
| UUUCUCCGA | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 | 4.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 | 2026-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.44 | Max 0.95
Coloring options: