HL_4ZSN_084

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4ZSN|1|RA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZSN_084 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1125

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4ZSN|1|RA|G|1910
4ZSN|1|RA|U|1911
4ZSN|1|RA|A|1912
4ZSN|1|RA|A|1913
4ZSN|1|RA|C|1914
4ZSN|1|RA|U|1915
4ZSN|1|RA|A|1916
4ZSN|1|RA|U|1917
4ZSN|1|RA|A|1918
4ZSN|1|RA|A|1919
4ZSN|1|RA|C|1920

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA

Chain QY

Killer protein