HL_5A2Q_006

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

5A2Q|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50880.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

5A2Q|1|2|G|377
5A2Q|1|2|U|378
5A2Q|1|2|C|379
5A2Q|1|2|G|380
5A2Q|1|2|C|381
5A2Q|1|2|C|382
5A2Q|1|2|G|383
5A2Q|1|2|U|384
5A2Q|1|2|G|385
5A2Q|1|2|C|386
5A2Q|1|2|C|387

Current chains

Chain 2

18S RRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN ES8

Chain L

RIBOSOMAL PROTEIN US17