Motif HL_50880.1 Version HL_50880.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5A2Q_006 | 5A2Q | 0.0000 | 1 | 2 | SSU rRNA | G | 377 | U | 378 | C | 379 | G | 380 | C | 381 | C | 382 | G | 383 | U | 384 | C | 386 | C | 387 | cWW | cWW | ntSH |
| 2 | HL_5AJ0_005 | 5AJ0 | 0.8498 | 0 | A2 | LSU rRNA | C | 199 | U | 200 | U | 201 | C | 202 | U | 203 | G | 204 | A | 205 | U | 206 | C | 207 | G | 208 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCGCCGUGCC | 1 |
| CUUCUGAUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCGCCGUGC | 1 |
| UUCUGAUC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.85 | Avg 0.42 | Max 0.85
Coloring options: