HL_5A2Q_019

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

5A2Q|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56205.1

Basepair signature

cWW-R-tSH-R-R-R-R

Number of instances in this motif group

26

Unit IDs

5A2Q|1|2|G|1054
5A2Q|1|2|A|1055
5A2Q|1|2|U|1056
5A2Q|1|2|C|1057
5A2Q|1|2|A|1058
5A2Q|1|2|G|1059
5A2Q|1|2|A|1060
5A2Q|1|2|U|1061
5A2Q|1|2|A|1062
5A2Q|1|2|C|1063
5A2Q|1|2|C|1064

Current chains

Chain 2

18S RRNA

Nearby chains

Chain 3

Internal ribosome entry site; IRES

Chain O

RIBOSOMAL PROTEIN US11