HL_56205.1

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	3-8	3-9	4-8
1	HL_3J79_016	3J79	0.7506	2	A	LSU rRNA	G	764	A	765	U	767	C	768	U	769	U	770	U	771	A	773	A	774	C	775	cWW	ncwW
2	HL_3J9M_048	3J9M	0.4315	0	AA	SSU rRNA	U	989	U	990	G	991	U	992	A	993	A	994	A	995	A	996	A	997	A	998	cWW	ntSH
3	HL_3J7A_018	3J7A	0.4617	0	A	SSU rRNA	A	969	G	970	G	971	U	972	G	973	A	974	A	975	A	976	U	977	U	978	cWW		tSH
4	HL_5A2Q_017	5A2Q	0.4713	0	2	SSU rRNA	A	957	G	958	G	959	U	960	G	961	A	962	A	963	A	964	U	965	U	966	cWW		ntSH
5	HL_4BTS_129	4BTS	0.4853	0	DA	SSU rRNA	A	878	G	879	G	880	U	881	G	882	A	883	A	884	A	885	U	886	U	887	cWW		tSH
6	HL_4V88_206	4V88	0.4758	0	A6	SSU rRNA	A	900	G	901	G	902	U	903	G	904	A	905	A	906	A	907	U	908	U	909	cWW		ntSH
7	HL_3JAM_020	3JAM	0.4456	0	2	SSU rRNA	A	899	G	900	G	901	U	902	G	903	A	904	A	905	A	906	U	907	U	908	cWW		tSH
8	HL_4V8P_158	4V8P	0.3914	0	E2	5.8S rRNA	G	121	U	122	G	123	U	124	A	125	A	126	A	127	A	128	A	129	C	130	cWW	ncWW	ntSH
9	HL_5AJ3_009	5AJ3	0.3648	0	A	SSU rRNA	C	342	U	343	G	344	U	345	A	346	A	347	A	348	A	349	A	350	G	351	cWW		tSH
10	HL_3J9W_015	3J9W	0.3059	0	AA	SSU rRNA	C	698	G	699	G	700	U	701	G	702	A	703	A	704	A	705	U	706	G	707	cWW	tSH	tSH
11	HL_4V4Q_118	4V4Q	0.3320	0	CA	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
12	HL_1FJG_015	1FJG	0.3493	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
13	HL_3J9W_017	3J9W	0.1181	1	AA	SSU rRNA	G	795	A	796	U	797	U	798	A	799	G	800	A	801	A	803	C	804	C	805	cWW	ncWB
14	HL_3J9M_050	3J9M	0.1219	1	AA	SSU rRNA	G	1074	A	1075	U	1076	U	1077	A	1078	G	1079	A	1080	A	1082	C	1083	C	1084	cWW
15	HL_4V4Q_120	4V4Q	0.0000	1	CA	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW
16	HL_1FJG_017	1FJG	0.1052	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW
17	HL_5AJ3_011	5AJ3	0.1170	1	A	SSU rRNA	G	426	A	427	U	428	U	429	A	430	G	431	A	432	A	434	C	435	C	436	cWW
18	HL_4BTS_131	4BTS	0.1451	1	DA	SSU rRNA	G	975	A	976	U	977	C	978	A	979	G	980	A	981	A	983	C	984	C	985	cWW
19	HL_3J7A_020	3J7A	0.3235	1	A	SSU rRNA	G	1066	A	1067	U	1068	C	1069	A	1070	G	1071	A	1072	A	1074	C	1075	C	1076	cWW	ncWB
20	HL_3JAM_022	3JAM	0.3083	1	2	SSU rRNA	G	996	A	997	U	998	C	999	A	1000	G	1001	A	1002	A	1004	C	1005	C	1006	cWW	ncWB		ntSH
21	HL_4V88_208	4V88	0.3313	1	A6	SSU rRNA	G	997	A	998	U	999	C	1000	A	1001	G	1002	A	1003	A	1005	C	1006	C	1007	cWW
22	HL_5A2Q_019	5A2Q	0.3236	1	2	SSU rRNA	G	1054	A	1055	U	1056	C	1057	A	1058	G	1059	A	1060	A	1062	C	1063	C	1064	cWW
23	HL_3J7P_096	3J7P	0.4417	1	S2	SSU rRNA	G	1054	A	1055	U	1056	C	1057	A	1058	G	1059	A	1060	A	1062	C	1063	C	1064	cWW	cWB
24	HL_5AJ0_031	5AJ0	0.5738	0	A2	LSU rRNA	G	1986	U	1987	G	1988	U	1989	A	1990	A	1991	C	1992	A	1993	A	1994	C	1995	cWW		tSH
25	HL_4V91_028	4V91	0.7294	0	1	LSU rRNA	G	1266	U	1267	G	1268	U	1269	A	1270	A	1271	C	1272	A	1273	A	1274	C	1275	ncWW
26	HL_3R9X_001	3R9X	0.6205	0	C	RNA301	A	1513	G	1514	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	C	1521	U	1522	cWW	ncWW			ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUCAGAUACC	6
AGGUGAAAUU	5
GAUUAGAUACC	5
CGGUGAAAUG	3
GUGUAACAAC	2
GAUUCUUUAAAC	1
UUGUAAAAAA	1
GUGUAAAAAC	1
CUGUAAAAAG	1
AGGGGAACCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	8
AUCAGAUAC	6
AUUAGAUAC	5
UGUAAAAA	3
UGUAACAA	2
AUUCUUUAAA	1
GGGGAACC	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_56205.1 Version HL_56205.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_56205.1 Version HL_56205.1 of this group appears in releases 2.0 to 2.0

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Csv

Json