HL_5A2Q_023
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 5A2Q|1|2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_62686.1
- Basepair signature
- cWW-R-R-R-R-R-R
- Number of instances in this motif group
- 10
Unit IDs
5A2Q|1|2|G|1245
5A2Q|1|2|A|1246
5A2Q|1|2|C|1247
5A2Q|1|2|U|1248
5A2Q|1|2|C|1249
5A2Q|1|2|A|1250
5A2Q|1|2|A|1251
5A2Q|1|2|C|1252
5A2Q|1|2|A|1253
5A2Q|1|2|C|1254
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain P
- RIBOSOMAL PROTEIN US19
- Chain Q
- RIBOSOMAL PROTEIN US9
- Chain U
- RIBOSOMAL PROTEIN US10
- Chain d
- RIBOSOMAL PROTEIN US14
- Chain f
- RIBOSOMAL PROTEIN ES31
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