Motif HL_62686.1 Version HL_62686.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AJ3_014 | 5AJ3 | 0.3426 | 1 | A | SSU rRNA | G | 568 | A | 569 | U | 570 | A | 571 | A | 572 | A | 573 | C | 574 | C | 575 | C | 577 | cWW | |
| 2 | HL_3J9M_053 | 3J9M | 0.3195 | 1 | AA | SSU rRNA | G | 1217 | A | 1218 | U | 1219 | A | 1220 | A | 1221 | A | 1222 | C | 1223 | C | 1224 | C | 1226 | cWW | |
| 3 | HL_4V4Q_124 | 4V4Q | 0.1732 | 1 | CA | SSU rRNA | G | 963 | A | 964 | U | 965 | G | 966 | C | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW | ncsS |
| 4 | HL_1FJG_021 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 963 | A | 964 | A | 965 | G | 966 | C | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW | |
| 5 | HL_3J9W_021 | 3J9W | 0.1263 | 1 | AA | SSU rRNA | G | 973 | A | 974 | A | 975 | G | 976 | C | 977 | A | 978 | A | 979 | C | 980 | C | 982 | cWW | |
| 6 | HL_4V88_212 | 4V88 | 0.1857 | 1 | A6 | SSU rRNA | G | 1188 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | cWW | |
| 7 | HL_3J7A_023 | 3J7A | 0.1898 | 1 | A | SSU rRNA | G | 1289 | A | 1290 | C | 1291 | U | 1292 | C | 1293 | A | 1294 | A | 1295 | C | 1296 | C | 1298 | cWW | |
| 8 | HL_3JAM_026 | 3JAM | 0.3603 | 1 | 2 | SSU rRNA | G | 1187 | A | 1188 | C | 1189 | U | 1190 | C | 1191 | A | 1192 | A | 1193 | C | 1194 | C | 1196 | cWW | |
| 9 | HL_4BTS_135 | 4BTS | 0.3757 | 1 | DA | SSU rRNA | G | 1160 | A | 1161 | C | 1162 | U | 1163 | C | 1164 | A | 1165 | A | 1166 | C | 1167 | C | 1169 | cWW | |
| 10 | HL_5A2Q_023 | 5A2Q | 0.4083 | 1 | 2 | SSU rRNA | G | 1245 | A | 1246 | C | 1247 | U | 1248 | C | 1249 | A | 1250 | A | 1251 | C | 1252 | C | 1254 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUCAACAC | 5 |
| GAUAAACCCC | 2 |
| GAAGCAACGC | 2 |
| GAUGCAACGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCAACA | 5 |
| AUAAACCC | 2 |
| AAGCAACG | 2 |
| AUGCAACG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.32 | Max 0.57
Coloring options: