HL_5A2Q_026

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

5A2Q|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06138.1

Basepair signature

cWW-cWW-R-R-R

Number of instances in this motif group

18

Unit IDs

5A2Q|1|2|G|1366
5A2Q|1|2|U|1367
5A2Q|1|2|U|1368
5A2Q|1|2|A|1369
5A2Q|1|2|A|1370
5A2Q|1|2|U|1371
5A2Q|1|2|U|1372
5A2Q|1|2|C|1373

Current chains

Chain 2

18S RRNA

Nearby chains

Chain R

RIBOSOMAL PROTEIN ES17