HL_5A2Q_029

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

5A2Q|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59580.1

Basepair signature

cWW-R-R-tWH-R-R-R-R

Number of instances in this motif group

2

Unit IDs

5A2Q|1|2|G|1613
5A2Q|1|2|A|1614
5A2Q|1|2|U|1615
5A2Q|1|2|U|1616
5A2Q|1|2|G|1617
5A2Q|1|2|C|1618
5A2Q|1|2|A|1619
5A2Q|1|2|A|1620
5A2Q|1|2|U|1621
5A2Q|1|2|U|1622
5A2Q|1|2|A|1623
5A2Q|1|2|U|1624
5A2Q|1|2|U|1625
5A2Q|1|2|C|1626

Current chains

Chain 2

18S RRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN US19

Chain S

RIBOSOMAL PROTEIN US13

Chain T

RIBOSOMAL PROTEIN ES19

Chain d

RIBOSOMAL PROTEIN US14