Motif HL_59580.1 Version HL_59580.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 4-8 | 4-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5A2Q_029 | 5A2Q | 0.0000 | 3 | 2 | SSU rRNA | G | 1613 | A | 1614 | U | 1615 | U | 1616 | G | 1617 | C | 1618 | A | 1619 | A | 1620 | U | 1624 | U | 1625 | C | 1626 | cWW | cWW | ntWH | |
| 2 | HL_5G2X_012 | 5G2X | 0.8062 | 0 | A | Group II catalytic intron | G | 494 | G | 495 | G | 496 | U | 497 | A | 498 | A | 499 | C | 500 | G | 501 | C | 502 | C | 503 | C | 504 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUGCAAUUAUUC | 1 |
| GGGUAACGCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCAAUUAUU | 1 |
| GGUAACGCC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-tWH-R-R-R-R
- Heat map statistics
- Min 0.81 | Avg 0.40 | Max 0.81
Coloring options: