HL_5A2Q_030
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 5A2Q|1|2|A|1663, 5A2Q|1|2|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55197.1
- Basepair signature
- cWW-tWH-R-tSH-R
- Number of instances in this motif group
- 15
Unit IDs
5A2Q|1|2|G|1658
5A2Q|1|2|U|1659
5A2Q|1|2|C|1660
5A2Q|1|2|A|1661
5A2Q|1|2|U|1662
5A2Q|1|2|A|1663
5A2Q|1|2|A|1664
5A2Q|1|2|G|1665
5A2Q|1|2|C|1666
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain Q
- RIBOSOMAL PROTEIN US9
- Chain T
- RIBOSOMAL PROTEIN ES19
- Chain U
- RIBOSOMAL PROTEIN US10
- Chain d
- RIBOSOMAL PROTEIN US14
Coloring options: