Motif HL_55197.1 Version HL_55197.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-7 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_071 | 3J9W | 0.3484 | 2 | BA | LSU rRNA | G | 1428 | U | 1429 | U | 1430 | G | 1431 | A | 1432 | U | 1433 | A | 1434 | C | 1437 | cWW | tWH | |
| 2 | HL_5FDU_035 | 5FDU | 0.0000 | 2 | 1A | LSU rRNA | G | 1435 | U | 1436 | U | 1437 | A | 1438 | A | 1439 | U | 1440 | A | 1441 | C | 1444 | cWW | tWH | |
| 3 | HL_5J7L_168 | 5J7L | 0.0876 | 2 | DA | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH | |
| 4 | HL_4V9F_037 | 4V9F | 0.1095 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH | |
| 5 | HL_4V8P_194 | 4V8P | 0.1075 | 2 | F1 | LSU rRNA | G | 1624 | U | 1625 | U | 1626 | A | 1627 | A | 1628 | U | 1629 | A | 1630 | C | 1633 | cWW | tWH | |
| 6 | HL_5AJ0_038 | 5AJ0 | 0.2271 | 2 | A2 | LSU rRNA | G | 2502 | U | 2503 | U | 2504 | C | 2505 | A | 2506 | G | 2507 | A | 2508 | C | 2511 | cWW | tWH | |
| 7 | HL_4V88_150 | 4V88 | 0.8409 | 1 | A5 | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | ||
| 8 | HL_4V8P_196 | 4V8P | 0.8696 | 1 | F1 | LSU rRNA | G | 1704 | U | 1705 | U | 1706 | A | 1707 | U | 1708 | C | 1709 | U | 1710 | U | 1712 | cWW | ||
| 9 | HL_3J79_036 | 3J79 | 0.8265 | 1 | A | LSU rRNA | G | 1835 | U | 1836 | U | 1837 | U | 1838 | U | 1839 | C | 1840 | U | 1841 | U | 1843 | cWW | ncwW | |
| 10 | HL_5A2Q_030 | 5A2Q | 0.7595 | 1 | 2 | SSU rRNA | G | 1658 | U | 1659 | C | 1660 | A | 1661 | U | 1662 | A | 1663 | A | 1664 | C | 1666 | cWW | tWH | |
| 11 | HL_4BTS_143 | 4BTS | 0.7423 | 1 | DA | SSU rRNA | G | 1566 | U | 1567 | C | 1568 | A | 1569 | U | 1570 | C | 1571 | A | 1572 | C | 1574 | cWW | tWH | |
| 12 | HL_3J7P_108 | 3J7P | 0.7180 | 1 | S2 | SSU rRNA | G | 1658 | U | 1659 | C | 1660 | A | 1661 | U | 1662 | A | 1663 | A | 1664 | C | 1666 | ncHH | ||
| 13 | HL_3J7A_032 | 3J7A | 0.8938 | 1 | A | SSU rRNA | U | 1891 | U | 1892 | C | 1893 | A | 1894 | U | 1895 | C | 1896 | A | 1897 | A | 1899 | cWW | ntWW | |
| 14 | HL_4V88_220 | 4V88 | 0.8781 | 1 | A6 | SSU rRNA | G | 1594 | U | 1595 | C | 1596 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW | |
| 15 | HL_3JAM_034 | 3JAM | 0.8437 | 1 | 2 | SSU rRNA | G | 1592 | U | 1593 | C | 1594 | A | 1595 | U | 1596 | C | 1597 | A | 1598 | C | 1600 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUAUUC | 4 |
| GUCAUCAGC | 3 |
| GUUAUCUUU | 2 |
| GUCAUAAGC | 2 |
| GUUGAUAUUC | 1 |
| GUUCAGAUCC | 1 |
| GUUUUCUUU | 1 |
| UUCAUCAGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAUU | 4 |
| UCAUCAG | 4 |
| UUAUCUU | 2 |
| UCAUAAG | 2 |
| UUGAUAUU | 1 |
| UUCAGAUC | 1 |
| UUUUCUU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- Basepair signature
- cWW-tWH-R-tSH-R
- Heat map statistics
- Min 0.07 | Avg 0.63 | Max 0.95
Coloring options: