HL_5A2Q_032

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAGCCAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91546.1

Basepair signature

cWW-tWH-R-R-R-R

Number of instances in this motif group

4

Unit IDs

5A2Q|1|3|C|79
5A2Q|1|3|U|80
5A2Q|1|3|A|81
5A2Q|1|3|G|82
5A2Q|1|3|C|83
5A2Q|1|3|C|84
5A2Q|1|3|A|85
5A2Q|1|3|U|86
5A2Q|1|3|G|87

Current chains

Chain 3

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain F

RIBOSOMAL PROTEIN US7

Chain O

RIBOSOMAL PROTEIN US11