Motif HL_91546.1 Version HL_91546.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V91_035 | 4V91 | 0.0000 | 2 | 1 | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH |
| 2 | HL_4V88_148 | 4V88 | 0.1928 | 2 | A5 | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH |
| 3 | HL_4IOA_034 | 4IOA | 0.6085 | 2 | X | LSU rRNA | G | 1402 | U | 1403 | C | 1404 | A | 1405 | A | 1406 | G | 1407 | A | 1408 | C | 1411 | cWW | tWH |
| 4 | HL_5A2Q_032 | 5A2Q | 1.0151 | 1 | 3 | IRES | C | 79 | U | 80 | A | 81 | G | 82 | C | 83 | C | 84 | A | 85 | G | 87 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGAUUC | 2 |
| GUCAAGAUUC | 1 |
| CUAGCCAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAGAUU | 2 |
| UCAAGAUU | 1 |
| UAGCCAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tWH-R-R-R-R
- Heat map statistics
- Min 0.19 | Avg 0.56 | Max 1.06
Coloring options: