HL_5A8L_005

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5A8L|1|A|G|4158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5A8L_005 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1342

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5A8L|1|A|C|4156
5A8L|1|A|U|4157
5A8L|1|A|G|4158
5A8L|1|A|G|4159
5A8L|1|A|G|4160
5A8L|1|A|G|4161
5A8L|1|A|C|4162
5A8L|1|A|G|4163
5A8L|1|A|G|4164

Current chains

Chain A

28S RIBOSOMAL RNA

Nearby chains

Chain P

P-SITE TRNA