5A8L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5A8L_001 | 1/A/1575:1584 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_5A8L_004 | 1/A/3729:3739 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_5A8L_005 | 1/A/4156:4164 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_5A8L_006 | 1/A/4380:4388 | No text annotation | homologous HL_5TBW_061 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5A8L_002 | No text annotation | ||
| HL_5A8L_003 | GNRA wlth tandem sheared | ||
| HL_5A8L_007 | No text annotation | ||
| HL_5A8L_008 | Externally structured | ||
| HL_5A8L_009 | GNRA | ||
| HL_5A8L_010 | Pseudoknot geometry |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5A8L_002 | 1/A/4363:4364, 1/A/4405:4407 | Major groove platform | geometric IL_7RQB_009 NA | |
| IL_5A8L_010 | 1/B/1706:1708, 1/B/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_5A8L_011 | 1/B/1708:1711, 1/B/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5A8L_001 | No text annotation | ||
| IL_5A8L_003 | Isolated non-canonical cWW pair | ||
| IL_5A8L_004 | Major groove platform | ||
| IL_5A8L_005 | Major groove minor groove platform with extra cWW | ||
| IL_5A8L_006 | No text annotation | ||
| IL_5A8L_007 | Major groove platform | ||
| IL_5A8L_008 | No text annotation | ||
| IL_5A8L_009 | Isolated cWS basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_5A8L_001 | 1/A/3875:3882, 1/A/4355:4363, 1/A/4407:4416, 1/A/4491:4497, 1/A/4515:4520 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5A8L_002 | No text annotation | ||
| J3_5A8L_001 | No text annotation |
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