HL_5A8L_009

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5A8L_009 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.1523

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5A8L|1|A|C|4566
5A8L|1|A|G|4567
5A8L|1|A|A|4568
5A8L|1|A|G|4569
5A8L|1|A|A|4570
5A8L|1|A|G|4571

Current chains

Chain A

28S RIBOSOMAL RNA

Nearby chains

Chain Q

EUKARYOTIC RELEASE FACTOR ERF1