HL_5A9Z_027
3D structure
- PDB id
- 5A9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAUAACG
- Length
- 8 nucleotides
- Bulged bases
- 5A9Z|1|AA|C|961||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5A9Z_027 not in the Motif Atlas
- Homologous match to HL_4WF9_027
- Geometric discrepancy: 0.2993
- The information below is about HL_4WF9_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
5A9Z|1|AA|C|955||||P_1
5A9Z|1|AA|G|956||||P_1
5A9Z|1|AA|A|957||||P_1
5A9Z|1|AA|U|958||||P_1
5A9Z|1|AA|A|959||||P_1
5A9Z|1|AA|A|960||||P_1
5A9Z|1|AA|C|961||||P_1
5A9Z|1|AA|G|962||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AN
- 50S ribosomal protein L16
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