HL_5AA0_040
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCAAGAGC
- Length
- 8 nucleotides
- Bulged bases
- 5AA0|1|AA|A|1634||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_040 not in the Motif Atlas
- Homologous match to HL_7A0S_041
- Geometric discrepancy: 0.382
- The information below is about HL_7A0S_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07145.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5AA0|1|AA|G|1630||||P_1
5AA0|1|AA|C|1630|||A|P_1
5AA0|1|AA|A|1631||||P_1
5AA0|1|AA|A|1632||||P_1
5AA0|1|AA|G|1633||||P_1
5AA0|1|AA|A|1634||||P_1
5AA0|1|AA|G|1635||||P_1
5AA0|1|AA|C|1636||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: