HL_5AA0_122
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGGAUUGAAAAUCCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_122 not in the Motif Atlas
- Homologous match to HL_7E8O_002
- Geometric discrepancy: 0.3468
- The information below is about HL_7E8O_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90229.1
- Basepair signature
- cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AA0|1|BC|G|28||||P_1
5AA0|1|BC|G|29||||P_1
5AA0|1|BC|G|30||||P_1
5AA0|1|BC|A|31||||P_1
5AA0|1|BC|U|32||||P_1
5AA0|1|BC|U|33||||P_1
5AA0|1|BC|G|34||||P_1
5AA0|1|BC|A|35||||P_1
5AA0|1|BC|A|36||||P_1
5AA0|1|BC|A|37||||P_1
5AA0|1|BC|A|38||||P_1
5AA0|1|BC|U|39||||P_1
5AA0|1|BC|C|40||||P_1
5AA0|1|BC|C|41||||P_1
5AA0|1|BC|C|42||||P_1
Current chains
- Chain BC
- tRNA chain 1
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BE
- Transfer RNA; tRNA
- Chain BK
- 30S ribosomal protein S7
- Chain BO
- 30S ribosomal protein S11
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