HL_5ADY_037

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5ADY|1|B|U|1396, 5ADY|1|B|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_037 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2797

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5ADY|1|B|G|1389
5ADY|1|B|U|1390
5ADY|1|B|U|1391
5ADY|1|B|A|1392
5ADY|1|B|A|1393
5ADY|1|B|U|1394
5ADY|1|B|A|1395
5ADY|1|B|U|1396
5ADY|1|B|U|1397
5ADY|1|B|C|1398

Current chains

Chain B

23S RRNA

Nearby chains

Chain T

50S RIBOSOMAL PROTEIN L23