HL_5ADY_056

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5ADY|1|B|A|2268, 5ADY|1|B|G|2269, 5ADY|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_056 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.3184

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5ADY|1|B|C|2264
5ADY|1|B|U|2265
5ADY|1|B|A|2266
5ADY|1|B|A|2267
5ADY|1|B|A|2268
5ADY|1|B|G|2269
5ADY|1|B|A|2270
5ADY|1|B|G|2271
5ADY|1|B|U|2272
5ADY|1|B|A|2273
5ADY|1|B|A|2274
5ADY|1|B|C|2275
5ADY|1|B|G|2276

Current chains

Chain B

23S RRNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16

Chain W

50S RIBOSOMAL PROTEIN L27