HL_5ADY_067

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUGCCAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_067 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3321

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5ADY|1|B|C|2699
5ADY|1|B|A|2700
5ADY|1|B|U|2701
5ADY|1|B|G|2702
5ADY|1|B|C|2703
5ADY|1|B|C|2704
5ADY|1|B|A|2705
5ADY|1|B|A|2706
5ADY|1|B|U|2707
5ADY|1|B|G|2708

Current chains

Chain B

23S RRNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17