HL_5ADY_068

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5ADY|1|B|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_068 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.2163

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5ADY|1|B|C|2745
5ADY|1|B|U|2746
5ADY|1|B|G|2747
5ADY|1|B|A|2748
5ADY|1|B|A|2749
5ADY|1|B|A|2750
5ADY|1|B|G|2751
5ADY|1|B|C|2752
5ADY|1|B|A|2753
5ADY|1|B|U|2754
5ADY|1|B|C|2755
5ADY|1|B|U|2756
5ADY|1|B|A|2757
5ADY|1|B|A|2758
5ADY|1|B|G|2759

Current chains

Chain B

23S RRNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6