HL_5AFI_077
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_077 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.1263
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|a|A|320||||P_1
5AFI|1|a|A|321||||P_1
5AFI|1|a|C|322||||P_1
5AFI|1|a|U|323||||P_1
5AFI|1|a|G|324||||P_1
5AFI|1|a|A|325||||P_1
5AFI|1|a|G|326||||P_1
5AFI|1|a|A|327||||P_1
5AFI|1|a|C|328||||P_1
5AFI|1|a|A|329||||P_1
5AFI|1|a|C|330||||P_1
5AFI|1|a|G|331||||P_1
5AFI|1|a|G|332||||P_1
5AFI|1|a|U|333||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
Coloring options: