HL_5AFI_107

3D structure

PDB id

5AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

5AFI|1|y|C|17||||P_1, 5AFI|1|y|G|18||||P_1, 5AFI|1|y|G|19||||P_1

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AFI_107 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1592

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AFI|1|y|C|13||||P_1
5AFI|1|y|A|14||||P_1
5AFI|1|y|G|15||||P_1
5AFI|1|y|H2U|16||||P_1
5AFI|1|y|C|17||||P_1
5AFI|1|y|G|18||||P_1
5AFI|1|y|G|19||||P_1
5AFI|1|y|H2U|20||||P_1
5AFI|1|y|A|21||||P_1
5AFI|1|y|G|22||||P_1

Current chains

Chain y

A/T-site Phe-tRNAPhe

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA