HL_5AFI_116
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_116 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.1111
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
5AFI|1|y|A|31||||P_1
5AFI|1|y|PSU|32||||P_1
5AFI|1|y|U|33||||P_1
5AFI|1|y|G|34||||P_1
5AFI|1|y|A|35||||P_1
5AFI|1|y|A|36||||P_1
5AFI|1|y|MIA|37||||P_1
5AFI|1|y|A|38||||P_1
5AFI|1|y|PSU|39||||P_1
Current chains
- Chain y
- A/T-site Phe-tRNAPhe
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain x
- mRNA
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